1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatagcttgtagactattatttagagctcaattaaaagatttcatgcaaggttttgatttactgattctgttcattaagcttttatatttcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGGACACAAGAGTTG
species | Zea mays |
transcript | GRMZM2G377609_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATEST: gi|78111204|gb|DV529601.1|DV529601
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
EST: GTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATEST: gi|24765753|gb|CA400912.1|CA400912
genomic: GTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATEST: gi|24767427|gb|CA402570.1|CA402570
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATEST: gi|71426237|gb|DR807287.1|DR807287
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATEST: gi|67014894|gb|CO443643.1|CO443643
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTTCCCTCATGTACCCCTTGTGTTGTAT
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTAT
tgcaaggttttgatttactgattctgttcattaagcttttatatttcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGGACACAAGAGTTG
tactgat putative branch site (score: 32)
cttttatatttcttc putative PPT
attaagcttttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagcttgtagactattatttagagctcaattaaaagatttcatgcaaggttttgatttactgattctgttcattaagcttttatatttcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGGACACAAGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG