1 5' 3' | 2 5' 3' | 3 5' 3' |
...gggaagtttaatttgatatgtcttttttgtttgagagagagaagggatcctctatctgattaaaacgccttgtttgacaattgacatgtgcattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAGCGGCTGTCGACGGACTGCCGCATGGTGATGACCACGTACGAGGGCCGC
species | Zea mays |
transcript | GRMZM2G377217_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAG GAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAEST: gi|20802340|gb|BQ293390.1|BQ293390
genomic: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaa ... cattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGA
EST: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAG GAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAEST: gi|78092565|gb|DV520939.1|DV520939
genomic: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaa ... cattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGA
EST: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAG GAGCTATTTCGGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAEST: gi|78089176|gb|DV517562.1|DV517562
genomic: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaa ... cattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGA
EST: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAG GAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGA
genomic: AAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaa ... cattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGA
gatcctctatctgattaaaacgccttgtttgacaattgacatgtgcattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAGCGGCTGTCGACGGACTGCCGCATGGTGATGACCACGTACGAGGGCCGC
aattgac putative branch site (score: 1)
tgattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaagtttaatttgatatgtcttttttgtttgagagagagaagggatcctctatctgattaaaacgccttgtttgacaattgacatgtgcattatccagGAGCTATTTCCGGTGCACTCACAGCAACTGCCGCGTGAAGAAACGGGTGGAGCGGCTGTCGACGGACTGCCGCATGGTGATGACCACGTACGAGGGCCGC
- - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg