1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttccgtagcattccaggttccagcacaaacttactttcctcattgataagtacctggtgtcgtaatttgatgttaaactcttgttgaactaaaaaaattgtgtgttattaatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAGGCCAAATTTTCTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCAT
species | Zea mays |
transcript | GRMZM2G374881_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|29544379|gb|CB604759.1|CB604759
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: ATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|71320622|gb|DR797046.1|DR797046
genomic: ATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|78543575|gb|DV621073.1|DV621073
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|7135787|gb|AW498266.1|AW498266
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: TTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|18180510|gb|BM381720.1|BM381720
genomic: TTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: AGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGAAGGATGGGATAAGTACGAGGGAEST: gi|7216231|gb|AW562353.1|AW562353
genomic: AGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: TGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|37380555|gb|CF627096.1|CF627096
genomic: TGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|88749443|gb|DY533584.1|DY533584
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: GCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|37378375|gb|CF625874.1|CF625874
genomic: GCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTCGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|37387307|gb|CF630846.1|CF630846
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: TGTAAAAGTTGCAGCTAACTTGATTAGG-TGNCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAEST: gi|78109398|gb|DV527814.1|DV527814
genomic: TGTTAAAGTTGCAGCTAACTTGATTAGGTTG-CTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
EST: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAG AACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
genomic: CTGTTAAAGTTGCAGCTAACTTGATTAGGTTGCTAGCTTATCAGAATAAGgtatgttccg ... taatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGA
aatttgatgttaaactcttgttgaactaaaaaaattgtgtgttattaatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAGGCCAAATTTTCTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCAT
tattaat putative branch site (score: 2)
aactaaaaaaattgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccgtagcattccaggttccagcacaaacttactttcctcattgataagtacctggtgtcgtaatttgatgttaaactcttgttgaactaaaaaaattgtgtgttattaatatccagAACATGTTGCAAGCTGGCATGATTGTTGGAGGATGGGATAAGTACGAGGGAGGCCAAATTTTCTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA