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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcatcgatcctctacacattcttttcatccttgttataaattaaatgttcataggttggttcagtaacacatttgatcatgtccgcagGCTGATATAATCTGCAACAAG

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340859|gb|FL372915.1|FL372915
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211357926|gb|FL387018.1|FL387018
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211458917|gb|FL402420.1|FL402420
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211319230|gb|FL384888.1|FL384888
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|101397865|gb|EB820809.1|EB820809
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211298857|gb|FL392428.1|FL392428
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211158456|gb|FL415219.1|FL415219
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211533538|gb|FL409967.1|FL409967
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211487556|gb|FL382361.1|FL382361
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211530844|gb|FL420796.1|FL420796
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|32868245|gb|CF007927.1|CF007927
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG
EST: gi|211504683|gb|FL413307.1|FL413307
EST:     AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAG                         GCTGATATAATCTGCAACAAG
genomic: AGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGgtcttcatcg ... atgtccgcagGCTGATATAATCTGCAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataaattaaatgttcataggttggttcagtaacacatttgatcatgtccgcagGCTGATATAATCTGCAACAAG
     aattaaatgttcata  TA-rich tract