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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcctttccatcaattttgtattcaatcatttttttgccccttatttcattaactattgtgcttgcaacttgaagGATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTTTTCTCCAGT

Basic information

species Zea mays
transcript GRMZM2G374088_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374088_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g04230.2 (Oryza sativa), 3'ss of exon 3
gtaagatcct-ttccatcaattttgtattcaatcatttttttgccccttatttcattaactattgtg-cttgcaacttgaagGATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTTTTCTCCAGT
||| ||   | ||   || ||    || |   ||   | |  |    | ||    |||  || ||||  |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||  
gtacgactttattttctctataacataatt--tcccctgtaagattttcatagactta--tactgtggtttgcaatttgaagGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931406|gb|EC874345.2|EC874345
EST:     GACTTGCACGTGCATCATTTAACGACTCTCTTTCAGCTATCTATTGGACA                         GATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTT
genomic: GACTTGCACGTGCATCATTTAACGACTCTCTTTCAGCTATCTATTGGACAgtaagatcct ... caacttgaagGATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTT
EST: gi|60350752|gb|DN217725.1|DN217725
EST:     GACTTGCACGTGCATCATTTAACGACTCTCTTTCAGCTATCTATTGGACA                         GATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTT
genomic: GACTTGCACGTGCATCATTTAACGACTCTCTTTCAGCTATCTATTGGACAgtaagatcct ... caacttgaagGATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaatcatttttttgccccttatttcattaactattgtgcttgcaacttgaagGATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTTTTCTCCAGT
                           cattaac  putative branch site (score: 2)
                     ttatttcattaactat  TA-rich tract