1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttagtcattcatggcaagtgtttgcttgtattcgttcttgctaccatattggcaattgttttgattcttgcaatgctcagcaaaaagtttcaaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGGTGGAAGATGTTCTCCTGGATGAAGGGAATGCCACAATTTTGACTCTCT
species | Zea mays |
transcript | GRMZM2G372398_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCACTAACAAGTTTGTGGCTNAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGEST: gi|76291540|gb|DV031108.1|DV031108
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTG
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGEST: gi|211345453|gb|FL473816.1|FL473816
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGEST: gi|32929212|gb|CF034024.1|CF034024
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGEST: gi|211541444|gb|FL362038.1|FL362038
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCMGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAAEST: gi|211368358|gb|FL031161.1|FL031161
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAA
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGEST: gi|211265965|gb|FL477742.1|FL477742
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
EST: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTG GTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
genomic: TTGCACTAACAAGTTTGTGGCTAAGGAAGAACTACGCAGACAGTTTTTTGgtaagacatt ... caaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGG
atattggcaattgttttgattcttgcaatgctcagcaaaaagtttcaaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGGTGGAAGATGTTCTCCTGGATGAAGGGAATGCCACAATTTTGACTCTCT
ttttgat putative branch site (score: 4)
aaaaagtttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtcattcatggcaagtgtttgcttgtattcgttcttgctaccatattggcaattgttttgattcttgcaatgctcagcaaaaagtttcaaattccagGTTCGCTTTATCGATTCACTTCCAGAAATATATCCTGTTGTTAACAAATGGGTGGAAGATGTTCTCCTGGATGAAGGGAATGCCACAATTTTGACTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG