1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagcaaagtatgggtttacataagattaaccatggattcagaattgtctttatgttgatatttttttattatattcatgtgaagttttttgctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGGTGTTAATGTTACAAAAGTTGAAGAAATTACACAGTTTCCTGAAATG
species | Zea mays |
transcript | GRMZM2G368902_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGATAAAACAGACCTGGCTAATCTTGGAAATGGTCTTCAGCGTTTGGG GTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGGEST: gi|22935424|gb|BU571699.1|BU571699
genomic: TCAGATAAAACAGACCTGGCTAATCTTGGAAATGGTCTTCAGCGTTTGGGgtaacccttt ... gctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGG
EST: TCAGATAAAACAGACCTGGCTAATCTTGGAAATGGTCTTCAGCGTTTGGG GTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGG
genomic: TCAGATAAAACAGACCTGGCTAATCTTGGAAATGGTCTTCAGCGTTTGGGgtaacccttt ... gctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGG
gtctttatgttgatatttttttattatattcatgtgaagttttttgctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGGTGTTAATGTTACAAAAGTTGAAGAAATTACACAGTTTCCTGAAATG
tgttgat putative branch site (score: 50)
ttttttgctcctgt putative PPT
ttgatatttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcaaagtatgggtttacataagattaaccatggattcagaattgtctttatgttgatatttttttattatattcatgtgaagttttttgctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGGTGTTAATGTTACAAAAGTTGAAGAAATTACACAGTTTCCTGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - -ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg