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gtaagatgacatatttgcatcttttcggcacagctgtatttctttccatgctttatccatttatacttagatttggtacctgtgacgagacataagttttcgctaaatttgtcttatcttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAAAGAATGGAACAGAAGACTGGCGTGACAAAAGATGATAATTTGAACAGCG
species | Zea mays |
transcript | GRMZM2G367834_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTG GCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAAEST: gi|148953549|gb|EE153060.2|EE153060
genomic: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTGgtaagatgac ... ttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAA
EST: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTG GCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAAEST: gi|211072179|gb|FK971287.1|FK971287
genomic: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTGgtaagatgac ... ttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAA
EST: GAAAGAACGAATTAACGAACTTGTGGCAGCACGTTTGGAGAAAACAACTG GCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGATEST: gi|148959798|gb|EC905675.2|EC905675
genomic: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTGgtaagatgac ... ttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAA
EST: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTG GCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAA
genomic: GAAAGAACGAATTAAGGAACTTGTGGCAGCACGTTTGGAGAAAACAACTGgtaagatgac ... ttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAA
tggtacctgtgacgagacataagttttcgctaaatttgtcttatcttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAAAGAATGGAACAGAAGACTGGCGTGACAAAAGATGATAATTTGAACAGCG
cgctaaa putative branch site (score: 19)
tcttatctt putative PPT
taaatttgtcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgacatatttgcatcttttcggcacagctgtatttctttccatgctttatccatttatacttagatttggtacctgtgacgagacataagttttcgctaaatttgtcttatcttgtctgcagGCAAACGGTGGGCCCGATGTGCAGCACATACAAGAAGAGAATCTTGCAGAAAGAATGGAACAGAAGACTGGCGTGACAAAAGATGATAATTTGAACAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG