Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89249880|gb|DY621666.1|DY621666EST: AAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTG GTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAG
genomic: AAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAG
EST:
gi|18180914|gb|BM382124.1|BM382124EST: AAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTG GTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAG
genomic: AAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
40 (downstream exon)
Score:
10GATGAGTGATTGGAAAATGTTCGGATTCTTTTGCAAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAGCGCCCCACTTCCGGATGATGATAGGTTGCGCATTGCCAGCGAGTTTAGA
Block sizes:
9 (upstream exon),
49 (downstream exon)
Score:
2GATGAGTGATTGGAAAATGTTCGGATTCTTTTGCAAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAGCGCCCCACTTCCGGATGATGATAGGTTGCGCATTGCCAGCGAGTTTAGA
Block sizes:
48 (upstream exon),
45 (downstream exon)
Score:
13GATGAGTGATTGGAAAATGTTCGGATTCTTTTGCAAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAGCGCCCCACTTCCGGATGATGATAGGTTGCGCATTGCCAGCGAGTTTAGA
Block sizes:
41 (upstream exon),
14 (downstream exon)
Score:
3GATGAGTGATTGGAAAATGTTCGGATTCTTTTGCAAGATCAAAGTTTCTATGCACTTAATCAGCTTGTGGATTTCATCATCTTGgtaattttac ... tggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAGCGCCCCACTTCCGGATGATGATAGGTTGCGCATTGCCAGCGAGTTTAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttgcagtttactttagttttttacactcacattctcagttctttggtctttagGTCGGCAAGTTTGTACGACAAAGGCGACCCGGAGTCACCGTCCCTTGAAAGCGCCCCACTTCCGGATGATGATAGGTTGCGCATTGCCAGCGAGTTTAGA
cactcac putative branch site (score: 3)
ttcttt putative PPT
tttactttagtttttt TA-rich tract