1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtaacttttacatgtcttagacacatcatttctgcattacaattatgatttgtatcgaaagaaatgctagttgaagtataaacatgaacggtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG
species | Zea mays |
transcript | GRMZM2G359397_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387175|gb|FL037068.1|FL037068
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|31353662|gb|CD438019.1|CD438019
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATCTGTCTCCGTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387176|gb|FL037069.1|FL037069
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211389809|gb|FL037082.1|FL037082
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|76282140|gb|DV021708.1|DV021708
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387172|gb|FL037065.1|FL037065
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211389808|gb|FL037081.1|FL037081
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211389807|gb|FL037080.1|FL037080
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387177|gb|FL037070.1|FL037070
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387183|gb|FL037076.1|FL037076
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTEST: gi|211387174|gb|FL037067.1|FL037067
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
EST: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAG TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
genomic: AGCACGAAGGTTCAAATTTGTCTCCTTTTCTACTCAAACTTTTTAATGAGgtttgtaact ... gtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGT
tgatttgtatcgaaagaaatgctagttgaagtataaacatgaacggtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG
aagtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaacttttacatgtcttagacacatcatttctgcattacaattatgatttgtatcgaaagaaatgctagttgaagtataaacatgaacggtcattgcagTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA