1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagaccccagacagccgaaattctttttattcttgcgtgcctgccctgcatgcttgactgaaagatgcaaatcttttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTTCTACGCGTGTAATGGGGACTTTCGG
species | Zea mays |
transcript | GRMZM2G358830_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|71769046|gb|DR966983.1|DR966983
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|149084848|gb|EE174353.2|EE174353
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|76926939|gb|DV171065.1|DV171065
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|148952361|gb|EC898175.2|EC898175
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|148929996|gb|EE285849.2|EE285849
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|76017809|gb|DT944979.1|DT944979
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTEST: gi|71769047|gb|DR966984.1|DR966984
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
EST: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAG GTTGCAGATTTTGGGGTGGCCAAATACCAAGCAGCTGAAGTAAACTCTGTT
genomic: GTGACATTAAGGCGGCGAACATCCTTCTGGATTATAACTACGAGCCAAAGgtagacccca ... tttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTT
ttcttgcgtgcctgccctgcatgcttgactgaaagatgcaaatcttttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTTCTACGCGTGTAATGGGGACTTTCGG
gcttgac putative branch site (score: 29)
tctttt putative PPT
aaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaccccagacagccgaaattctttttattcttgcgtgcctgccctgcatgcttgactgaaagatgcaaatcttttggcacagGTTGCAGATTTTGGGTTGGCCAAATACCAAGCAGCTGAAGTAACCTCTGTTTCTACGCGTGTAATGGGGACTTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG