1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatgctgccttcaattttttgttctcccccctccccttggagtgggccagtacgtgcgctttgttgtcttgtgcaatgcatcccccaggttatacttgtgctggttagttgatttgccataaccataactttcctgttctttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAACTTCCAAAAGGAGCTTTTGTCTGTGAATATGTTGGAGAGTTGCTAACAA
species | Zea mays |
transcript | GRMZM2G357972_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAG GTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAAEST: gi|87157378|gb|DY402167.1|DY402167
genomic: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAGgtaatgctgc ... ttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAA
EST: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAG GTGTTTTCGACACGGEST: gi|76926465|gb|DV170878.1|DV170878
genomic: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAGgtaatgctgc ... ttttaacaagGTGTTTTCGACACGG
EST: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAG GTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAAEST: gi|87156652|gb|DY401441.1|DY401441
genomic: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAGgtaatgctgc ... ttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAA
EST: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAG GTGTTTTCGACACGGGAAGGGAANGGGTGGGGGCEST: gi|76926464|gb|DV170877.1|DV170877
genomic: CGCAATGTGGTAACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAGgtaatgctgc ... ttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGC
EST: ACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAG GTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAA
genomic: ACCGTGTAGTTCAACGTGGTATAACTTGCAATCTGCAGgtaatgctgc ... ttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAA
ttgtgctggttagttgatttgccataaccataactttcctgttctttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAACTTCCAAAAGGAGCTTTTGTCTGTGAATATGTTGGAGAGTTGCTAACAA
ccataac putative branch site (score: 71)
ctttcctgttcttttt CT-rich tract
ttctttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctgccttcaattttttgttctcccccctccccttggagtgggccagtacgtgcgctttgttgtcttgtgcaatgcatcccccaggttatacttgtgctggttagttgatttgccataaccataactttcctgttctttttaacaagGTGTTTTCGACACGGGAAGGGAAGGGGTGGGGGCTACGCACACTTGATGAACTTCCAAAAGGAGCTTTTGTCTGTGAATATGTTGGAGAGTTGCTAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA