Sequence
atgc intronic sequence ATGC exonic sequence...cttagcaacgtatggatatttacctatataatattagtgtcatagtgatattttgtcacatggattctacatattatatatctctatttttttattcccgTGACAATGTCTATCCTTGGATTCAACGAGTTTATGACACTATTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G350256_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 3'ss of exon 20
---------------------------------------------------------------------------cttagcaacgtatggatatttacctatataatattagtgtcatagtgatattttgtcacatggattctacatattatatatctctattttttta--ttcccgTGACAATGTCTATCCTTGGATTCAACGAGTTTATGACACTATTGAT-----
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gtatcctgttaattgaaatctttaattttcgtttggtacttgaaacattgtggagtgggattgacctattgggtataaaatgatgtatgattgtatgccta-actgttttactttttccttcatcagGAGGCAAATAAGAGGAACA-ACAACTGGCTGCCACCTCCATGGGCACTTGCCGCAATGGCTATCCTTGGATTCAACGAGTTCATGACATTGTTAAAGTATT
upper sequence: GRMZM2G350256_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g39310.1 (Oryza sativa), 3'ss of exon 20
---------------------------------------------------------------------------cttagcaacgtatggatatttacctatataatattagtgtcatagtgatattttgtcacatggattctacatattatatatctctattttttt--attcccgTGACAATGTCTATCCTTGGATTCAACGAGTTTATGACACTATTGAT
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gtatcctgttaattgaaatctttaattttcgtttggtacttgaaacattgtggagtgggattgacctattgggtataaaatgatgtatgattgtatgccta-actgttttactttttccttcatcagGAGGCAAATAAGAGGAACA-ACAACTGGCTGCCACCTCCATGGGCACTTGCCGCAATGGCTATCCTTGGATTCAACGAGTTCATGACATTGTTAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatattttgtcacatggattctacatattatatatctctatttttttattcccgTGACAATGTCTATCCTTGGATTCAACGAGTTTATGACACTATTGAT
tatctctattttttta CT-rich tract
attctacatattatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttagcaacgtatggatatttacctatataatattagtgtcatagtgatattttgtcacatggattctacatattatatatctctatttttttattcccgTGACAATGTCTATCCTTGGATTCAACGAGTTTATGACACTATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgg