1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagggacattttcctgaggcccattgatctttttttagtagcgcttgcctgtccttggcagcttgtgctgtatcgcgcttcggagttgccttttgctactgagccatatcatatcacacacatatatatcatctggctcgtcacgctcctccccttgcgacgctgatgtggaaacgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATGCAAAAACACGTGGGGAAGCTACGAGTGCGGCTGCAGCGGGGGCCTGCT
species | Zea mays |
transcript | GRMZM2G347541_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATEST: gi|32935750|gb|CF040562.1|CF040562
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATATTGATGAATGTAAGGAAAGGACTGCGTGCCAGTGCGAAGAATGCAGATEST: gi|33099496|gb|CF059456.1|CF059456
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATATTGATGAATGTAAGGAAAGGACTGCGTGCCAGTGCGAAGAATGCAGATEST: gi|211224453|gb|FL435606.1|FL435606
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATEST: gi|71423918|gb|DR806180.1|DR806180
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: TGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATEST: gi|76292778|gb|DV032346.1|DV032346
genomic: TGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATEST: gi|76288308|gb|DV027876.1|DV027876
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATEST: gi|50336834|gb|CO531960.1|CO531960
genomic: CTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
EST: ACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG ATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
genomic: ACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAGgtaagggaca ... cgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGAT
catctggctcgtcacgctcctccccttgcgacgctgatgtggaaacgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATGCAAAAACACGTGGGGAAGCTACGAGTGCGGCTGCAGCGGGGGCCTGCT
cgctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggacattttcctgaggcccattgatctttttttagtagcgcttgcctgtccttggcagcttgtgctgtatcgcgcttcggagttgccttttgctactgagccatatcatatcacacacatatatatcatctggctcgtcacgctcctccccttgcgacgctgatgtggaaacgcgcgacagATGTTGATGAATGTAAGGAAAGGACTGTGTGCCAGTGCGAAGAATGCAGATGCAAAAACACGTGGGGAAGCTACGAGTGCGGCTGCAGCGGGGGCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG