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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttactttcccccttttttgcttctttaagttcattgcagagttactttttgaagtagttgactgacatcttgcactttctaatttgtgtagAAAAACTTTGGATTGGCTTAGAAAGTTTCGTATTTGATTGGCTAATTAATGCAGACAG

Basic information

species Zea mays
transcript GRMZM2G344967_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G344967_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g58410.1 (Oryza sativa), 3'ss of exon 3
-------gtggttactt-tcccccttttttgcttctttaagttcattgcagagttactttttgaagtagttgactgacatcttgcactttctaatttgtgtagAAAAACTTTGGATTGGCTTAGAAAGTTTCGTATTTGATTGGCTAATTAATGCAGACAG
       |   | ||   |     |  | |  |  ||| | ||  |||||  | |||||| ||| |  |||| || ||    ||    || || ||| | |||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||
acaagagggaataacaggttgttataatattatattttgacttatttgcacggctactttctgatg-ggttggctaactagctg----ttttattttatctagagAAACTTTGGATTGGCCTGGAAAATTTTGTATTTGATTGGCTAATTAATGCAGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagttactttttgaagtagttgactgacatcttgcactttctaatttgtgtagAAAAACTTTGGATTGGCTTAGAAAGTTTCGTATTTGATTGGCTAATTAATGCAGACAG
                                        ttctaat  putative branch site (score: 2)
                                       tttctaattt  TA-rich tract