1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtaggtgatctagcatttagggtcgttggcactcttcagatgcttgatgaaagagaacccagatatgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
species | Zea mays |
transcript | GRMZM2G344279_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGGTTC
genomic: AGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
gatgaaagagaacccagatatgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
gcttgat putative branch site (score: 436)
atatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgatctagcatttagggtcgttggcactcttcagatgcttgatgaaagagaacccagatatgttatctgtgtgcttatggggatgcttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - -aaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt