Sequence
atgc intronic sequence ATGC exonic sequencegtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
gtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
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------gtgagaaac-tataccgctacggcttaaaat-tgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG--------------
upper sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 2
------------gtgagtctcaggttcata-tgccagt-attataca-gaggatgaatttgtaggcttatgctg-ttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
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gtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgttacaaatctgttga--ctgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG--------------
upper sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
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--gtatgtcatttaca-atgttctttcaataaattagcttgttgcgtgtgaaggag-tgttgattataattatgaatcttttagGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAG--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9461698|gb|BE453860.1|BE453860EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
atgaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG