1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgcatcctctacagtagttagcacgttacgctattagtgtatccatgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA
species | Zea mays |
transcript | GRMZM2G343688_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCANAGAGCGGAGATTCTACAGTEST: gi|9953320|gb|BE639903.1|BE639903
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|78083899|gb|DV512292.1|DV512292
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTTTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTTTACAGTEST: gi|211470731|gb|FL464832.1|FL464832
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|76288092|gb|DV027660.1|DV027660
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|89246999|gb|DY618785.1|DY618785
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTTTACAGTEST: gi|148946845|gb|EC892122.2|EC892122
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|9961361|gb|BE644254.1|BE644254
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|148958551|gb|EC904794.2|EC904794
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|78111230|gb|DV529627.1|DV529627
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|211329018|gb|FL455397.1|FL455397
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGACCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCACCTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|23357488|gb|BU645137.1|BU645137
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|9461590|gb|BE453807.1|BE453807
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|149075103|gb|EE163593.2|EE163593
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTTTACAGTEST: gi|211329017|gb|FL455396.1|FL455396
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|14245022|gb|BG842960.2|BG842960
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|149104942|gb|EE290413.2|EE290413
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTTTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTTTACAGTEST: gi|211061441|gb|FL105772.1|FL105772
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|50336583|gb|CO531709.1|CO531709
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTEST: gi|14203011|gb|BG836688.1|BG836688
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtgatg ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
atgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA
agctaac putative branch site (score: 263)
aaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatcctctacagtagttagcacgttacgctattagtgtatccatgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA
-tgcatcc
- - - - - - - - - - - - - - - - - - - tgtatcc
- - - - - - - - - - - - - - - - - - - - - - - tgtatgc