1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatttcgagtccaagtgttgaagtactggaggaactcaatgagcactgagcagcaattcatttggtcacacatcttaaatactcctttgttgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTGCAATCAGCTATAAATTGCAGAGTCTTAGGCGTATTATCTATATTGAGG
species | Zea mays |
transcript | GRMZM2G339336_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAG ACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTEST: gi|211377763|gb|FL319190.1|FL319190
genomic: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAGgtaatgtgga ... tgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
EST: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAG ACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTEST: gi|211200655|gb|FL341862.1|FL341862
genomic: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAGgtaatgtgga ... tgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
EST: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAG ACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTEST: gi|33771105|gb|CF272766.1|CF272766
genomic: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAGgtaatgtgga ... tgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
EST: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAG ACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTEST: gi|60353341|gb|DN220314.1|DN220314
genomic: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAGgtaatgtgga ... tgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
EST: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAG ACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
genomic: CAATATATGCATCTCTTGGTGAGGATGCATTGGTGCATTCACTAAATGAGgtaatgtgga ... tgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCT
ctgagcagcaattcatttggtcacacatcttaaatactcctttgttgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTGCAATCAGCTATAAATTGCAGAGTCTTAGGCGTATTATCTATATTGAGG
ctcctttgtt CT-rich tract
atcttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcgagtccaagtgttgaagtactggaggaactcaatgagcactgagcagcaattcatttggtcacacatcttaaatactcctttgttgaatttcagACACAGGTTTCAACTCTGATATGTGATTCGAAGCAACTTAAGAAGATACCTGCAATCAGCTATAAATTGCAGAGTCTTAGGCGTATTATCTATATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - aactcaa
- - - - - - - - - - - - - - - - - - - - - gcactga
- - - - - - - - - - - - - - - - - - - - - - - - -gcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaca