Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccgtttgcgcctgtctattaacgatactgttgagctgctaaagactattcttcggttaactttgtgttttttgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTCTG

Basic information

species Zea mays
transcript GRMZM2G337425_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G337425_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g16570.1 (Oryza sativa), 3'ss of exon 2
gtaatccgtttgcgcc-tgtctattaacgatactgttgagctgctaaaga---ctattcttcggttaac----tttgtgttttttgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTCTG
|||||  |     ||| | | || || ||||| | || |||||  ||| |   | ||| |   |||||     | | |  || || ||||||||||||| | |||||||||||||||||||| |||||||| ||||| ||  || ||
gtaatgtgggcatgccctttgtactaccgatattattaagctgtaaaaaatatcgattttctagttaatgcgatctattattctttttgggcagTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109926|gb|DV528341.1|DV528341
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|50332883|gb|CO528009.1|CO528009
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|89755993|gb|DY686200.1|DY686200
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|148931116|gb|EC873780.2|EC873780
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211089296|gb|FL241969.1|FL241969
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|78083979|gb|DV512372.1|DV512372
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|91048354|gb|EB158772.1|EB158772
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|91876517|gb|EB406474.1|EB406474
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|88756244|gb|DY540385.1|DY540385
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211086849|gb|FL241965.1|FL241965
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211089297|gb|FL241970.1|FL241970
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211089293|gb|FL241966.1|FL241966
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|86467325|gb|DY233695.1|DY233695
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|76288198|gb|DV027766.1|DV027766
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211089295|gb|FL241968.1|FL241968
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211539417|gb|FK948581.1|FK948581
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|78085073|gb|DV513466.1|DV513466
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|101389965|gb|EB816914.1|EB816914
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
EST: gi|211089294|gb|FL241967.1|FL241967
EST:     TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTG                         TTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC
genomic: TGCAGGGAGCAGGCCGGTGAATAGCAATTCCTTGGCTTTTCTTCTAACTGgtaatccgtt ... tgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgagctgctaaagactattcttcggttaactttgtgttttttgttgggcagTTCTTGTTTTGTTCATGGTACTGAACTCGCACCAGATCTCTCCCAATCTTCTG
                                        ttttttgtt  CT-rich tract
                                        ttttttgtt  TA-rich tract