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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtaactccagtagcctgattgtatttcaccctgcacatttttgtaatgtttcttgtgcactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC

Basic information

species Zea mays
transcript GRMZM2G330650_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G330650_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g25390.1 (Oryza sativa), 3'ss of exon 3
gttggtaactcc----agtagcctg---attgtatttcaccc-tgcacatttttgtaat-gtttcttgtgcactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
||||||| ||||      ||  ||     |||||   || |  |||| | |  |||||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
gttggtacctccctttgatatgctatttgttgtagcccatctgtgcatactcatgtaaaagtttcttatgaactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774532|gb|DR972410.1|DR972410
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
EST: gi|78122353|gb|DV540737.1|DV540737
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
EST: gi|211019324|gb|FL371811.1|FL371811
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
EST: gi|211320442|gb|FL345947.1|FL345947
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
EST: gi|32827094|gb|CD966772.1|CD966772
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
EST: gi|148961350|gb|EE012080.2|EE012080
EST:     ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATG                         ATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
genomic: ATAATCCACCTGAGATCAACAAGCAGCTAAATGACAGAAAACAGTTCATGgttggtaact ... cactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgattgtatttcaccctgcacatttttgtaatgtttcttgtgcactgtacagATCAAAGAGTTGAATTCCTATGTCACCTTGAGGAAAAC
 gcctgat  putative branch site (score: 4)
                        atttttgtaatgttt  TA-rich tract