Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcctgtgtgtactttgattcagtctgcgcttgatattccattgaaatggttttattctctagatctaacagaaactgattttacttccaatcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA

Basic information

species Zea mays
transcript GRMZM2G329144_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G329144_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g24380.1 (Oryza sativa), 3'ss of exon 3
tgcctgtgtgtactttgattcagtctgcgcttgatattccattgaaa-tggttttattctctagatctaacagaaactgattttac----ttccaatcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA
      ||     |||||||   | ||      ||||| | || ||| |     |  ||| | | |       ||||| | || ||    ||||||  |    ||| || |||||  | ||||| || |||||||||||||||||||| ||||||||  |||| ||||| ||| | || ||||||||||| ||||||||||||||
-----ttgcagtatttgattatatttggatcgaatatttctttaaaagttccacttatctttggtttaggacaaaactaacttcacctgcttccaacatgagcagATTTTGAGATTCTAGCATTTCCCTGCAATCAGTTCTTGCGACAAGAGCCAGGATCTGACCAGCAAATAAAGGATTTTGCTTGCACAAGATTTAAAGCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211496099|gb|FL377912.1|FL377912
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211131056|gb|FL391854.1|FL391854
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211501843|gb|FL388426.1|FL388426
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211500170|gb|FL426488.1|FL426488
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211084683|gb|FL387358.1|FL387358
EST:     GACCAATTACACGCAGCTTACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|22545491|gb|BU097850.1|BU097850
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|14243063|gb|BG840760.2|BG840760
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211530013|gb|FL385894.1|FL385894
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211520783|gb|FL373488.1|FL373488
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|28983489|gb|BQ538710.2|BQ538710
EST:     CCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: CCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211225829|gb|FL402237.1|FL402237
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211329903|gb|FL381786.1|FL381786
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211292210|gb|FL380933.1|FL380933
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211017372|gb|FL408588.1|FL408588
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|101391621|gb|EB817747.1|EB817747
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211278589|gb|FL376801.1|FL376801
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211060112|gb|FL393160.1|FL393160
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211009248|gb|FL416491.1|FL416491
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211530055|gb|FL388002.1|FL388002
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211525016|gb|FL424286.1|FL424286
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211284108|gb|FL384407.1|FL384407
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211214723|gb|FL394680.1|FL394680
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|8367944|gb|BE050889.1|BE050889
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|87157407|gb|DY402196.1|DY402196
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211458918|gb|FL402421.1|FL402421
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211147264|gb|FL387786.1|FL387786
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|60356015|gb|DN222988.1|DN222988
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211337056|gb|FL419792.1|FL419792
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|67011682|gb|CO440431.1|CO440431
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|60358353|gb|DN225326.1|DN225326
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211518880|gb|FL413873.1|FL413873
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211063314|gb|FL403455.1|FL403455
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|37379775|gb|CF626646.1|CF626646
EST:     GACCAATCACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|116822363|gb|EC865760.1|EC865760
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211429056|gb|FL404563.1|FL404563
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211065174|gb|FL369022.1|FL369022
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211082960|gb|FL420013.1|FL420013
EST:     GACCAATTACACGCAGCTGACGGAGCTTNMTCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211007518|gb|FL457984.1|FL457984
EST:     TATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: TATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211496470|gb|FL394442.1|FL394442
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211401198|gb|FL425445.1|FL425445
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|26558316|gb|CA830551.1|CA830551
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|13382326|gb|BG459001.1|BG459001
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|51592947|gb|CV072093.1|CV072093
EST:     CGGAGCTTT-TCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: CGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|47961660|gb|CN844369.1|CN844369
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|32919699|gb|CF024511.1|CF024511
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211341878|gb|FL422746.1|FL422746
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211209105|gb|FL370007.1|FL370007
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|61236533|gb|DN586283.1|DN586283
EST:     ACCAATTACACGCAGTTGACGGAGCTTTATCAGAAGTACAGGGTACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCA
genomic: ACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGG-ACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCA
EST: gi|211506468|gb|FL386341.1|FL386341
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211455876|gb|FL373123.1|FL373123
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211266758|gb|FL409742.1|FL409742
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211221434|gb|FL386101.1|FL386101
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|16926216|gb|BM079284.1|BM079284
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGGAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211081760|gb|FL378025.1|FL378025
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTCCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211136736|gb|FL400349.1|FL400349
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211003170|gb|FL398082.1|FL398082
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211429343|gb|FL418455.1|FL418455
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211093343|gb|FL430023.1|FL430023
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211158277|gb|FL406080.1|FL406080
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211057368|gb|FL403435.1|FL403435
EST:     ACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCCA
genomic: ACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGT-ACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCC-A
EST: gi|211325357|gb|FL370094.1|FL370094
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTCCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211045305|gb|FL393094.1|FL393094
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211436512|gb|FL387571.1|FL387571
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|10191601|gb|BE761677.1|BE761677
EST:     AATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCCTGCAATCAGTTCCTGCGACAGGAGCCAG
genomic: AATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|9953563|gb|BE640146.1|BE640146
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211516379|gb|FL408121.1|FL408121
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211107550|gb|FL406867.1|FL406867
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCWTTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|60341752|gb|DN208725.1|DN208725
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211466205|gb|FL385417.1|FL385417
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211408331|gb|FL399287.1|FL399287
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211439776|gb|FL418972.1|FL418972
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211317842|gb|FL424596.1|FL424596
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211146309|gb|FL420905.1|FL420905
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211026994|gb|FL377496.1|FL377496
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
EST: gi|211227878|gb|FL402241.1|FL402241
EST:     GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG                         ACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG
genomic: GACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 513

TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 589

TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 609

TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 643

TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAGgtctgttctt ... atcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggttttattctctagatctaacagaaactgattttacttccaatcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA
                                              tcttgct  CT-rich tract
     ttttattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcctgtgtgtactttgattcagtctgcgcttgatattccattgaaatggttttattctctagatctaacagaaactgattttacttccaatcttgctagACTTCGAGATATTGGCATTCCCTTGCAATCAGTTCTTGCGACAGGAGCCAGGTACTGATCAGCAGATACAAGACTTTGCTTGCACCAGATTTAAAGCTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
tgcctgt
- - - - - - - -tgattca
- - - - - - - - - - - - - gcgcttg
- - - - - - - - - - - - - - - - - - - - - tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatt