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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggtctgcacatgctgtcagttttacagggccccattttagttttagcacttcttactaatacatatgcattttctagTTTAAGATTCTTCTGCAGAAGAAGGAGGAGGAGGATGCTATCAAGCTGATGAAGGCCATGATGGGCTATGTTGACTTCAACCCTCAGTTCCTGATACTCT

Basic information

species Zea mays
transcript GRMZM2G328795_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G328795_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g66690.1 (Oryza sativa), 3'ss of exon 3
gtaatg-gtctgcacatgctgtcagttttacag-ggccccattttagttttagcacttcttactaatacatatgcattttctagTTTAAGATTCTTCTGCAGAAGAAGGAGGAGGAGGATGCTATCAAGCTGATGAAGGCCATGATGGGCTATGTTGACTTCAACCCTCAGTTCCTGATACTCT
||||   ||||  ||||| |   || ||| ||  | ||||| ||||  ||| | |  | |||||||       | ||||  ||| ||||||||  ||||||||||  ||||||||| || ||  |||||| ||||||| | ||| |||||| |||||||||||||||| ||||| | | |||| 
gtaacaagtctatacatgtt---agctttgcaatgaccccaattta--tttggtaaat-ttactaacctgagcgaattta-tagGTTAAGATTAATCTGCAGAAGGGGGAGGAGGACGAGGCATTCAAGCAGATGAAGACGATGGTGGGCTGTGTTGACTTCAACCCTGAGTTCTTAACACTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagggccccattttagttttagcacttcttactaatacatatgcattttctagTTTAAGATTCTTCTGCAGAAGAAGGAGGAGGAGGATGCTATCAAGCTGATGAAGGCCATGATGGGCTATGTTGACTTCAACCCTCAGTTCCTGATACTCT
                               tactaat  putative branch site (score: 1)
                                             cattttct  putative PPT
                              ttactaatacatat  TA-rich tract