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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggagcttacgcttttgtctccattgagtattattaatgatacccattcgtgatatttgatctgaagagttcatttgatctttcagATTCTGCTTTGTGTTGATGTTGCTGCAACATCTGCTAAGTCAGTTCATATGTGCCGATTTCTTCTCGATGAG

Basic information

species Zea mays
transcript GRMZM2G327311_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G327311_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g40990.3 (Oryza sativa), 3'ss of exon 11
gttaggagcttacgcttttgtctccattgagtattattaatgatacccattcgtgatatttgatctgaagagttcatttgatctttcagATTCTGCTTTGTGTTGATGTTGCTGCAACATCTGCTAAGTCAGTTCATATGTGCCGATTTCTTCTCGATGAG
|| ||   ||     | | |||| |||  | |||| || |||||   || |   ||| ||||| ||||| |    || ||| ||||||||||||||| ||  ||||||| |||||||| ||||||| |||||   ||||||||||||||||||| || |||
gtgagagtctctatttatggtctgcatcaaatatttttcatgatcatcactatggatttttgacctgaaaacactatgtgaactttcagATTCTGCTCTGCATTGATGTAGCTGCAACTTCTGCTAGGTCAGGAGATATGTGCCGATTTCTTCTTGACGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaatgatacccattcgtgatatttgatctgaagagttcatttgatctttcagATTCTGCTTTGTGTTGATGTTGCTGCAACATCTGCTAAGTCAGTTCATATGTGCCGATTTCTTCTCGATGAG
                                               tctttc  CT-rich tract
                     atatttgat  TA-rich tract