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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatactcattaattacccggatagtctcatgcacacctaaagtattttattactgctgttccaatctgcgaaaactcttgaagaacttcattcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------------------gtatactcattaattacccggata-gtctcatgcacacctaaagtattttatt--actgctgttccaatctgcgaaaactcttgaagaacttcattcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC
                                                               ||  | | |   ||     | | | ||  |        ||| |   |||   |  |   ||     ||||  | |   |||    |     |  |  |||||| | ||||||||||| |  |||||||||||||||||||| |||||||| ||||| || || || 
gtaaggcttcgctggaatgctgagaaaattattgtggagtggcaggcttcagcagcgtgtggcgtggatttacctatgttttgtacaagtaactgatggtgctataccttttagctgaaaaacttgcataatcctcaaggcctcaatcatgttatactatttgcagGTTGTGAAGCCCAGACAATTGCAGGCTGCAAGCATTCCCGGACTCCTGGGGATGTTCCAAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211231050|gb|FL343816.1|FL343816
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211104072|gb|FL353160.1|FL353160
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211270237|gb|FL344649.1|FL344649
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211156212|gb|FL365662.1|FL365662
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211262703|gb|FL336157.1|FL336157
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTG
EST: gi|211089285|gb|FL354017.1|FL354017
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211206059|gb|FL353696.1|FL353696
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCCAGGACTCCTTGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCC-AGGACTCCTTGG
EST: gi|211228973|gb|FL343790.1|FL343790
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211232319|gb|FK959916.1|FK959916
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211040670|gb|FL334591.1|FL334591
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211158673|gb|FL319015.1|FL319015
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211165501|gb|FL341377.1|FL341377
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211227097|gb|FL350438.1|FL350438
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCCTTGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCC-TTGG
EST: gi|211108070|gb|FL361613.1|FL361613
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211411946|gb|FL334072.1|FL334072
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCC
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCC
EST: gi|211399607|gb|FL346420.1|FL346420
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211444525|gb|FL325223.1|FL325223
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211050070|gb|FL348912.1|FL348912
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|9254345|gb|BE344813.1|BE344813
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211367120|gb|FL319134.1|FL319134
EST:     TAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCANACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGG
genomic: CAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCA-ACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGG
EST: gi|211078212|gb|FL339583.1|FL339583
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211096168|gb|FL332998.1|FL332998
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211320067|gb|FL327288.1|FL327288
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211262919|gb|FL344603.1|FL344603
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211012592|gb|FL327139.1|FL327139
EST:     CAAGGAGGACCTCCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CAAGGAGGACCTC-ACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211180977|gb|FL324623.1|FL324623
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211162340|gb|FL348127.1|FL348127
EST:     CCAAGGAG-ACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCTTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211320874|gb|FL365294.1|FL365294
EST:     CCAAGGAGGACCTCACCTTGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211411809|gb|FL328773.1|FL328773
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211170529|gb|FL341423.1|FL341423
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGAACTCCTTGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGA-CTCCTTGG
EST: gi|211306361|gb|FL348172.1|FL348172
EST:     CTAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACAAG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211314342|gb|FL341215.1|FL341215
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|148945896|gb|EC891188.2|EC891188
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|67020062|gb|CO448811.1|CO448811
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGG
EST: gi|211444176|gb|FL306971.1|FL306971
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGAC-AACACG                         ATCGTGAAGCCCAGGC-TTTGCAGGCTGCAAGCATTCCA
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCA
EST: gi|211108071|gb|FL361614.1|FL361614
EST:     CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG                         ATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGNACTCCTTGG
genomic: CCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACGgtatggtttc ... attcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGG-ACTCCTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattactgctgttccaatctgcgaaaactcttgaagaacttcattcttgcagATCGTGAAGCCCAGGCCTTTGCAGGCTGCAAGCATTCCAGGACTCCTTGGGATTTTTCAGAAC
                                         cttcattctt  CT-rich tract