1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgaagctataaaacctgtaaattctccgccatttaatcaacattgtgatctatcgcttcagttgtaactgaccactgacttgttcttttttttacttagCTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGGTAATCATAGGAACTCATCTCTCTCAGATACTGTTCT
species | Zea mays |
transcript | GRMZM2G318871_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gtgatctatcgcttcagttgtaactgaccactgacttgttcttttttttacttagCTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGGTAATCATAGGAACTCATCTCTCTCAGATACTGTTCT
cactgac putative branch site (score: 2)
cttgttctttttttta CT-rich tract
ttcttttttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagctataaaacctgtaaattctccgccatttaatcaacattgtgatctatcgcttcagttgtaactgaccactgacttgttcttttttttacttagCTGCAATCGTCAGACATATCTAAAGATAAGCAAGTTGATCCAGCTTTAGCAGACACACTGAAGGTAATCATAGGAACTCATCTCTCTCAGATACTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-tgaagct
- - - - - - -acctgta
- - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactga