1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attggcttttgcagaaacgatcacagcctagctttttgattgatgcaaacgatagtgaaacatccgaaaactgacatccaacttgtgtacatccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATCAAGGCTAGCAACATCCTTCTTGACCAGCAGTGGAACGCCAAAGTATCG
species | Zea mays |
transcript | GRMZM2G317938_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATEST: gi|18162265|gb|BM332104.1|BM332104
genomic: ATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
EST: ATTATGCTTGCCACAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCTGGAA-CGAAAGGTGGTCCACCGCGACAEST: gi|18176160|gb|BM351214.1|BM351214
genomic: ATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCG-AAGGTGGTCCACCGCGACA
EST: ATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATEST: gi|78091402|gb|DV519776.1|DV519776
genomic: ATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
EST: CACAGCTAAAGG GGTGGCCTACCTCCACGAGGGGCGGGAACCGAAGGTGGTCCACCGCGACATEST: gi|18171117|gb|BM340957.1|BM340957
genomic: CACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
EST: ACATCAGGATGAACATTATGCTTGCCACAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATEST: gi|18170385|gb|BM340225.1|BM340225
genomic: ACATCAGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
EST: TGACATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATEST: gi|110195160|gb|EC877057.1|EC877057
genomic: TGACATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
EST: AGGAGGAACATTATGTTTGCCCCAGCTAAAGG GCTGGCCTACCTCCACGAGGGGCGGGAACCGAAGGTGGTCCCCCGGGACAT
genomic: AGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgtt ... atccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACAT
caaacgatagtgaaacatccgaaaactgacatccaacttgtgtacatccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATCAAGGCTAGCAACATCCTTCTTGACCAGCAGTGGAACGCCAAAGTATCG
aactgac putative branch site (score: 120)
catcccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggcttttgcagaaacgatcacagcctagctttttgattgatgcaaacgatagtgaaacatccgaaaactgacatccaacttgtgtacatccccccagGCTGGCCTACCTCCACGAGGGGCTGGAACCGAAGGTGGTCCACCGCGACATCAAGGCTAGCAACATCCTTCTTGACCAGCAGTGGAACGCCAAAGTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - ttttgca
- - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccaa