1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattgctagaagtatatcctactgcaaaatagttcaagtatttgtctgtgcaattttctgtaatatttctatagtgttatcttatttgaaacatgggacttgacttgctctggtcatgttccctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACCAACGCACAGCTGAGCGAGCG
species | Zea mays |
transcript | GRMZM2G316635_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAG TAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACCEST: gi|22472441|gb|BU036921.1|BU036921
genomic: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAGgtattgctag ... ctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACC
EST: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAG TAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACCEST: gi|21088911|gb|BQ401224.1|BQ401224
genomic: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAGgtattgctag ... ctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACC
EST: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGCTGAAG TAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACC
genomic: GAAGACGGCTTATAATAAGCATGGAAAAAGCATGGATTCTTGTGTTGAAGgtattgctag ... ctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACC
tatcttatttgaaacatgggacttgacttgctctggtcatgttccctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACCAACGCACAGCTGAGCGAGCG
acttgac putative branch site (score: 4)
ttccctattt putative PPT
tatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgctagaagtatatcctactgcaaaatagttcaagtatttgtctgtgcaattttctgtaatatttctatagtgttatcttatttgaaacatgggacttgacttgctctggtcatgttccctatttatagTAGTCGAGGTTGAGTCAGCTCTACGACATAAAGCAAAATTGGAAAGGCACCAACGCACAGCTGAGCGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA