1 5' 3' | 2 5' 3' | 3 5' 3' |
...gctcattcattatctatcacttgctaaaagactaacacgtactataagaatcagatttatttatgtatcataagactcactgttacccaccttcatgtagATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGGAAGATAATAAGTAACATGGGGATGGATTGAGCTGTATAAGTTCCAAAGG
species | Zea mays |
transcript | GRMZM2G315726_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAGCAAATACAGTCTAGAGGGCACGTTGGCGATGATATACGATCTG ATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTCGGEST: gi|84969762|gb|DV170504.2|DV170504
genomic: TGTGAAGCAAATACAGTCTAGAGGGCACGTTGGCGATGATATACGATCTGgtaggttctc ... cttcatgtagATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGG
EST: TGTGAAGCAAATACAGTCTAGAGGGCACGTTGGCGATGATATACGATCTG ATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGG
genomic: TGTGAAGCAAATACAGTCTAGAGGGCACGTTGGCGATGATATACGATCTGgtaggttctc ... cttcatgtagATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGG
aagaatcagatttatttatgtatcataagactcactgttacccaccttcatgtagATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGGAAGATAATAAGTAACATGGGGATGGATTGAGCTGTATAAGTTCCAAAGG
gactcac putative branch site (score: 2)
cccaccttc putative PPT
agatttatttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcattcattatctatcacttgctaaaagactaacacgtactataagaatcagatttatttatgtatcataagactcactgttacccaccttcatgtagATTCTGAAGGTGAAGAGGAACATGAGGATTGATTGAGCTGTGTAGAGTTGGAAGATAATAAGTAACATGGGGATGGATTGAGCTGTATAAGTTCCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA