1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggttgatggcaaggttgaatttgtattacttagtcactagggggtgtcgactctccagaaataaattctccctgatgcatattttttgcttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTT
species | Zea mays |
transcript | GRMZM2G314679_T06 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGEST: gi|5296305|gb|AI783075.1|AI783075
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGEST: gi|91873753|gb|EB403710.1|EB403710
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGEST: gi|5901227|gb|AW042327.1|AW042327
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG CTGAGATAACATTGTTTGATGGGTATATTGTCGGTTACAAGGTTGTACATGEST: gi|6227104|gb|AW155808.1|AW155808
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
tgtcgactctccagaaataaattctccctgatgcatattttttgcttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTT
ccctgat putative branch site (score: 4)
tattttttgcttcttt putative PPT
agaaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttgatggcaaggttgaatttgtattacttagtcactagggggtgtcgactctccagaaataaattctccctgatgcatattttttgcttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA