1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccgaactgaacctgtgttcttataattttcagtctattttttttaccttcagacctcaaagctacagtagggtaacatccttaagtatttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAG
species | Zea mays |
transcript | GRMZM2G314386_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGAT GAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGEST: gi|148970703|gb|EE021421.2|EE021421
genomic: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGATgtccgaactg ... atttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAG
EST: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGAT GAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCEST: gi|211311913|gb|FL092761.1|FL092761
genomic: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGATgtccgaactg ... atttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATC
EST: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGAT GAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGEST: gi|211311911|gb|FL092759.1|FL092759
genomic: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGATgtccgaactg ... atttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAG
EST: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGAT GAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAG
genomic: CTCATTTAGACCGGGTGGCTGCCCTCGTTATGGTCTTCGATATGAGTGATgtccgaactg ... atttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAG
tttaccttcagacctcaaagctacagtagggtaacatccttaagtatttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAG
gggtaac putative branch site (score: 9)
ttaagtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgaactgaacctgtgttcttataattttcagtctattttttttaccttcagacctcaaagctacagtagggtaacatccttaagtatttatgcagGAATCCACCTTGCTTACTCTGCAAAGCTGGGCTGCCAGTGTTGATATCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG