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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcggcaatccatcattctctctctgtcaactcccgaagatgattctatgactagctgtgttccagtctaattgtcaagtagtgattttttttcagGTTTTGTCAAGTGAATTATGAAGACCCAAACTACAAAATTGGCTTGCCCGTGTTCACCATCCATGGGGACCAAGATTATCCTACTGGAACT

Basic information

species Zea mays
transcript GRMZM2G309109_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G309109_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g08030.1 (Oryza sativa), 3'ss of exon 3
--------------------------------------------------------------------------gttcggcaatccatcat-tctctctctgtcaactcc-cgaagatgatt--ctatgactagctg-tgttccagtct-----aattgtcaagtagtgattttttttcagGTTTTGTCAAGTGAATTATGAAGACCCAAACTACAAAATTGGCTTGCCCGTGTTCACCATCCATGGGGACCAAGATTATCCTACTGGAACT
                                                                           ||  || |  |||||| |   | | | | ||     | |||   |||   |||  || |||  ||  | | | |     | ||  ||  |  |||| |  || ||||||| ||| |||||||| |||||||||||| | ||| ||||||||||| || |||||| | ||||||   || |||   ||  | |||   
gtgcagtaaattaaattatttgatcttttcatggctgaattaacttctcaactttgttactttatctcactaggctttagctaatcatcatctaattatatattaagaaggccaagccaattatttattcctggctactgaactattattcagaacttaacacattatgatgtcatt-cagGTTTGGTCGAGTGAATTTTGAAGACCCAAATTTCAACATTGGCTTGCCTGTTTTCACCGTACATGGGACTCATGATGGCCCAGCAGGAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctatgactagctgtgttccagtctaattgtcaagtagtgattttttttcagGTTTTGTCAAGTGAATTATGAAGACCCAAACTACAAAATTGGCTTGCCCGTGTTCACCATCCATGGGGACCAAGATTATCCTACTGGAACT
                        gtctaat  putative branch site (score: 3)
                                            ttttttttc  putative PPT
                                      tagtgatttttttt  TA-rich tract