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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacccttgccatcttatggaagcattcatgttccactttgctatttttaatgtgcatctgcttttctatttgaagGATTATGTGGCAACGAGGTGGTACCGGGCACCTGAACTATGTGGTTCTTTTTTCTCCAAA

Basic information

species Zea mays
transcript GRMZM2G306028_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G306028_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g49430.1 (Oryza sativa), 3'ss of exon 3
gtaagacccttgccatcttatggaagcattcatgttccactttgc-tatttttaatgtgcatc-tgcttttctatttgaagGATTATGTGGCAACGAGGTGGTACCGGGCACCTGAACTATGTGGTTCTTTTTTCTCCAAA
|||||   |||        ||   ||  || |  |||| ||||   | ||| |  | |  ||  || | | || | ||||||||||||| ||||||||||||||||| ||||||||| ||||||| || ||||||||||||
gtaaggtgctt--------atatgagattttacattcctctttaagtctttatgttattaattatgttctactttgtgaagGATTATGTTGCAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211184183|gb|FL014726.1|FL014726
EST:     GTCTTGCCCGTGCATCATTTAATGATGCCCCTTCAGCTATATTTTGGACA                         GATTATGTGGCAACGAGGTGGTACCGGGCACCTGAACTATGTGGTTCTTTT
genomic: GTCTTGCCCGTGCATCATTTAATGATGCCCCTTCAGCTATATTTTGGACAgtaagaccct ... ctatttgaagGATTATGTGGCAACGAGGTGGTACCGGGCACCTGAACTATGTGGTTCTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcattcatgttccactttgctatttttaatgtgcatctgcttttctatttgaagGATTATGTGGCAACGAGGTGGTACCGGGCACCTGAACTATGTGGTTCTTTTTTCTCCAAA
                        ttttaat  putative branch site (score: 3)
                                    tctgcttttctattt  putative PPT
                tttgctatttttaat  TA-rich tract