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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtgacctagcatattatgtagtttgtcgtggagcttttattagtaaaataaagcacacagatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgctgttatattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggagcttttattagtaaaataaagcacacagatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagtt-aatttgtgctgttatattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
||||| | |||| |  |  | ||| | || | ||      ||||| |||||| | ||| ||            | |||| ||  | | |       || | ||| |||  | ||| |     ||| | ||||| || |||  || || | |   || |||  |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
gtgaatttaccttg--tgatgtgttggttattgttata--tttatcagtaaattgaagtac------------tgtaaactagtatattt------gaatgttt-attaccttttaataccgctttaatatctttgtgtttgatatgagttacaatgttgcgtagATTGGGAAAGGATCAAGAGGAGATGTTACTATATTGCCTACTCTTGTTGTGAACAATCGGCAATACCGAG

upper sequence: GRMZM2G303631_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggagcttttattagtaaaataaagcacacagatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgctgttatattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
                                                                         | |   |  | | | |  ||    | |  |||||||      | | ||  |  ||        || |  ||     | |||  ||   |||||||| || || ||  |||| |||||||| ||||||||||| |||||||| || || || ||||||||||
------------------------------------------------------------------------gtattgtactttataattgctattaattcattcattgcatcagtgcagtaatatat--------agatgtttaacaatattagttttggtagATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAG

upper sequence: GRMZM2G303631_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 3'ss of exon 3
gtgaagtgacctagcatattatgtagtttgtcgtggagcttttattagtaaaataaagcacacagatttattttttaaaatataacagtcactgcagactatttcattgaccttttaccgtccttcattatctatgagttaatttgtgctgttatattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
  | |   | ||    | | || || ||| |        |||||||       |  |||| ||   ||| || |||         | | |  |       |||   ||||  ||      | |    | |   |     |  ||         |  |  || || ||||||||||  ||||||| ||||| ||||||||||| || ||||||||||||||  | ||||||||||
--gtaagcatctcttct-tcatatatttttta-------ttttattgaagtgcttcagca-acccttttgttgtttgttgggcttctggcttttatacgcattgtcttgagattg-gttattccagttcaatcaaacactgtttgacaagaacacttcctacagGTTGGGAAAGGAACAAGAGGCGATGTCACTATATTGCCCACCCTTGTTGTGAACAATAGACAATATCGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5847202|gb|AW000281.1|AW000281
EST:     CAAATGCTGATTCTGTCCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|5325106|gb|AI783297.1|AI783297
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|211449604|gb|FL033165.1|FL033165
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|5325027|gb|AI783218.1|AI783218
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGNTGNG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|211156293|gb|FL375842.1|FL375842
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|32850609|gb|CD990290.1|CD990290
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|91054221|gb|EB164639.1|EB164639
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|211229612|gb|FL380029.1|FL380029
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG
EST: gi|211212797|gb|FL419176.1|FL419176
EST:     CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAG                         ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGT-
genomic: CAAATGCTGATTCTGACCACCCGTTACTTAAAATGGAACAAGATGCTCAGgtgaagtgac ... tattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttttaccgtccttcattatctatgagttaatttgtgctgttatattgtatagATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG
                                        tgttatattgtata  TA-rich tract