1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccccccaaaaaaaaagaatatgctttggtccttacctctgcattttaaagtttcctttcttcgtatactgattctttctaggcttggtaataacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACAACCATAGACATTGA
species | Zea mays |
transcript | GRMZM2G303431_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAG GAATACAAGCCAGGTTACACTGCGCCATTTTTTGTTCAGCCAGATGAGACAEST: gi|109179339|gb|EC379935.1|EC379935
genomic: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAGgttggttaag ... taacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACA
EST: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAG GAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACAEST: gi|32858443|gb|CD998124.1|CD998124
genomic: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAGgttggttaag ... taacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACA
EST: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAG GAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACAEST: gi|32919905|gb|CF024717.1|CF024717
genomic: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAGgttggttaag ... taacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACA
EST: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAG GAATACAAGCCAGGCTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACA
genomic: AACGCTGGTGCAACGAGAAAGGAGACACTACTTGTGAAATTTGTCATGAGgttggttaag ... taacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACA
taaagtttcctttcttcgtatactgattctttctaggcttggtaataacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACAACCATAGACATTGA
taataac putative branch site (score: 40)
taataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccccaaaaaaaaagaatatgctttggtccttacctctgcattttaaagtttcctttcttcgtatactgattctttctaggcttggtaataacctgtagGAATACAAGCCAGGTTACACTGCGCCACCTCGTGTTCAGCCAGATGAGACAACCATAGACATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
cccccca
- - - aaaaaaa
- - - - - - - - - tatgctt
- - - - - - - - - - - - -tggtcct
- - - - - - - - - - - - - - - - - - -ctgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatt