Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaacttttttcctttttttagtgaaattgtaaatgttatatgttgatatgcctcgttgaatcagGTCTATGTAGGCAAAGAGAAACAAACTGTTGCAGAAATGCTTCCTTATTTGAGATTAGGATACATTTCAGATCCAGACGAAATGCAGTCTATACTCTCTT

Basic information

species Zea mays
transcript GRMZM2G302195_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302195_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g13460.1 (Oryza sativa), 3'ss of exon 8
gtgggaacttt--tttccttttttt-----------agtgaaattgtaaatgttatatgttgatatgcctc-gttgaatcagGTCTATGTAGGCAAAGAGAAACAAACTGTTGCAGAAATGCTTCCTTATTTGAGATTAGGATACATTTCAGATCCAGACGAAATGCAGTCTATACTCTCTT
||||||||| |  |||||||||| |           | || || |  ||||||| ||| |||| ||||||  | || || |||||| ||| || ||||||||  ||||  ||||||||||||| || ||||||||  |||||||||||||||||||||| |||||||| || ||||| ||||
gtgggaactatgatttcctttttcttttccatttggaatgcaactacaaatgttgtatattgacatgccttaggtgcattagGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttttttagtgaaattgtaaatgttatatgttgatatgcctcgttgaatcagGTCTATGTAGGCAAAGAGAAACAAACTGTTGCAGAAATGCTTCCTTATTTGAGATTAGGATACATTTCAGATCCAGACGAAATGCAGTCTATACTCTCTT
                               tgttgat  putative branch site (score: 4)
                                         cctcgtt  putative PPT
     tttttagtgaaattgt  TA-rich tract