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gtgtgtacagttttctccaatatgatgataactaccatgtagattttgaacagctcagtctgctagcctcttatgctttgttcctttgcttgcatatccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG
species | Zea mays |
transcript | GRMZM2G181151_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211464055|gb|FL062026.1|FL062026
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|32919410|gb|CF024222.1|CF024222
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211464049|gb|FL062020.1|FL062020
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211045587|gb|FL062119.1|FL062119
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|31664290|gb|CD573015.1|CD573015
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211474170|gb|FL062078.1|FL062078
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|33100953|gb|CF060913.1|CF060913
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211223693|gb|FL399500.1|FL399500
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211279000|gb|FL407011.1|FL407011
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211469118|gb|FL062056.1|FL062056
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211476688|gb|FL062089.1|FL062089
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211466586|gb|FL062037.1|FL062037
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211131888|gb|FL371457.1|FL371457
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211471640|gb|FL062065.1|FL062065
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|8367004|gb|BE049949.1|BE049949
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: CGACTGTATCTGGTGTGGCCGGGCCTCTGGCTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATCGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211332062|gb|FL381794.1|FL381794
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|32851420|gb|CD991101.1|CD991101
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211124910|gb|FL425297.1|FL425297
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGAAGATGGCACCACTEST: gi|33100666|gb|CF060626.1|CF060626
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATEST: gi|211461534|gb|FL062016.1|FL062016
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211045584|gb|FL062116.1|FL062116
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211132918|gb|FL391883.1|FL391883
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211029340|gb|FL373997.1|FL373997
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|9953932|gb|BE640515.1|BE640515
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTATTG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211172669|gb|FL375066.1|FL375066
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211464053|gb|FL062024.1|FL062024
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211439866|gb|FL422480.1|FL422480
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211427007|gb|FL427232.1|FL427232
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211034220|gb|FL370384.1|FL370384
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211459002|gb|FL061993.1|FL061993
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211332674|gb|FL416300.1|FL416300
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211466587|gb|FL062038.1|FL062038
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211466594|gb|FL062045.1|FL062045
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|211448189|gb|FL410292.1|FL410292
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTEST: gi|24462502|gb|BM660033.1|BM660033
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
gctcagtctgctagcctcttatgctttgttcctttgcttgcatatccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG
tccatct CT-rich tract
atctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtacagttttctccaatatgatgataactaccatgtagattttgaacagctcagtctgctagcctcttatgctttgttcctttgcttgcatatccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT