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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttgaaatcttgaattgtgccgagcttataacaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA

Basic information

species Zea mays
transcript GRMZM2G180724_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
gtatacttgaaatcttgaattgtgccgagcttata-acaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA
           || ||  |||   | | | |  |    ||||| |||  | || ||||| | |  ||   | | || ||||   |     |  || ||    ||||   ||||||||||||||| ||||||||||| || ||||| ||||||| ||| |||||||| |||||||| ||||||||||| ||||| ||||||||||
---------gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagc-tgcttttcattaattcctttgttttcattggcttaatg-tagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 3
gtatacttgaaatcttgaattgtgccgagcttataacaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA
           |  ||  | | | | ||| |  |   |||||    |   ||   |    ||   |   | | ||| |||   |   | |   | ||   |||||   ||||||||||||||| ||||||||||| || ||||| |||||||  || |||||||| |||||||| ||||||||||| ||||| ||||||||||
---------gtacatttcactttactgagatctttcaaagatgat-tatcaacaatgtatctgccttccattaatgacttggttttctttggtttaatg-cagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGTGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 3
gtatacttgaaatct-tgaattgtgccgagcttataacaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA
 |  |    |||||| | | |||     |||||     ||  |   |  | | |   | |       | |    ||| || |   | |  ||  |       |||||  ||| ||||| ||||  ||| | ||| |||||||||  |||||||  || ||||| ||||||||||||||||||||| | ||||| ||||| ||||
cttcatgctaaatctcttacttgaattaagcttcc--taatcttttaataaattcaccttttgttccattttaaatgtctcaaaccttgatt--ttgttgttagGATTCCACTTACAAATACTATGAGGTAATCTTGGTTGATGCTGCTCACAATGCTATCCGGAACGACCCAAGAATCAACTGGATCTGCAAGCCTGTCCACA

upper sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 3
-------------gtatacttgaaatcttgaattgtgccgagc--ttataacaagatagcatgagaattttcatcctagttagtactgatgcct-tatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA
              |  | |  |     ||| |||| |    |  || |||     |    |    ||| |  | |    || | |   |     ||   | ||  |  |||    ||||||   || ||||||||||  ||||| ||||| |||||||  ||||||| | ||||||| || |||||||||||||| ||| ||||||| ||||||||||
gtttgtagtgtgattccattcaatgatatgatttgtcctatccagttgtaatgttttgctttctatattgttttacacactactgccattaatgataaaacgtttctgttgat--gcagGATTCAACTTACAAGTACTATGAGATAATCCTTGTTGATGCTGCTCACAACACCATCCGAAATGACCCAAGAATCAATTGGATATGCAAACCTGTGCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439673|gb|DR820723.1|DR820723
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71312859|gb|DR792956.1|DR792956
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|149083919|gb|EE173295.2|EE173295
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|14191289|gb|BG833519.1|BG833519
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTCCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|31361321|gb|CD445678.1|CD445678
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|149083918|gb|EE173294.2|EE173294
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTCCAAGTACTTGGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|21760047|gb|BQ635588.1|BQ635588
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGCTGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71312849|gb|DR792955.1|DR792955
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|22818973|gb|BU499063.1|BU499063
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|15100604|gb|BI396395.1|BI396395
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|148949917|gb|EC895420.2|EC895420
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTCCAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71311474|gb|DR792086.1|DR792086
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71774755|gb|DR972633.1|DR972633
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|211482748|gb|FL422874.1|FL422874
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|148970789|gb|EE021541.2|EE021541
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|78118822|gb|DV537206.1|DV537206
EST:     GACAAAAGCTTGGTGGACTCGGGGTTCTCATCTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|148990631|gb|EE032022.2|EE032022
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71426969|gb|DR808019.1|DR808019
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|76281248|gb|DV020816.1|DV020816
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|22715565|gb|BU197836.1|BU197836
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|148949918|gb|EC895421.2|EC895421
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|74246317|gb|DT654231.1|DT654231
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|16925352|gb|BM078420.1|BM078420
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGTTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|78089949|gb|DV518323.1|DV518323
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|21432397|gb|BQ547887.1|BQ547887
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|71426970|gb|DR808020.1|DR808020
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|148970788|gb|EE021540.2|EE021540
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|78027684|gb|DV496071.1|DV496071
EST:     GACGAAAGCTTGGTGGACTCAGGGTTTTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|20301204|gb|BQ164147.1|BQ164147
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|110954943|gb|EE174995.1|EE174995
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|18171256|gb|BM341096.1|BM341096
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|76015117|gb|DT942287.1|DT942287
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|211521230|gb|FL397614.1|FL397614
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCCTGGTTGATGTGGCTCACAC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCC-TGGTTGATGTGGCTCACAC
EST: gi|87156514|gb|DY401303.1|DY401303
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|211336188|gb|FL370173.1|FL370173
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTAC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTAC
EST: gi|31362092|gb|CD446449.1|CD446449
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|78118821|gb|DV537205.1|DV537205
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|149085487|gb|EE174996.2|EE174996
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|211337970|gb|FL462255.1|FL462255
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|28873661|gb|CB329619.1|CB329619
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|21432144|gb|BQ547634.1|BQ547634
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|5005764|gb|AI711826.1|AI711826
EST:     GACGAAAGCTTGGTGGACTCAGGGTTTTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|76922744|gb|DV169152.1|DV169152
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|76281247|gb|DV020815.1|DV020815
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
EST: gi|78089948|gb|DV518322.1|DV518322
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 811

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 594

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 459

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 506

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttga ... tgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA
                    tactgat  putative branch site (score: 506)