1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacggattttatatgtggcactgtaattttgattgcatgaaaaatgctgcagttacataacgtattttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGGTGCTACTGTTTACCAGGCTGGATATCATGTTGGTGTCAAGGGCCAATAC
species | Zea mays |
transcript | GRMZM2G180575_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGCAAAGGAGCTTAAGGAAAAAATAGAGGATGAGTATCGGGTGAACAT GATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGGEST: gi|78117912|gb|DV536299.1|DV536299
genomic: CAGGCAAAGGAGCTTAAGGAAAAAATAGAGGATGAGTATCGGGTGAACATgtacggattt ... ttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGG
EST: CAGGCAAAGGAGCTCAAGGAAAAAATAGAGGATGAGTATCGGGTGAACAT GATTCTTGACAATCTCCCACTAGTTGTTCCTCTTGCAAGGCAGGATAGGGGEST: gi|160481645|gb|EY254215.1|EY254215
genomic: CAGGCAAAGGAGCTTAAGGAAAAAATAGAGGATGAGTATCGGGTGAACATgtacggattt ... ttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGG
EST: CAGGCAAAGGAGCTCAAGGAAAAAATAGAGGATGAGTATCGGGTGAACAT GATTCTTGACAATCTCCCACTAGTTGTTCCTCTTGCAAGGCAGGATAGGGG
genomic: CAGGCAAAGGAGCTTAAGGAAAAAATAGAGGATGAGTATCGGGTGAACATgtacggattt ... ttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGG
tgtaattttgattgcatgaaaaatgctgcagttacataacgtattttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGGTGCTACTGTTTACCAGGCTGGATATCATGTTGGTGTCAAGGGCCAATAC
acataac putative branch site (score: 468)
tattttcttc CT-rich tract
atgaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggattttatatgtggcactgtaattttgattgcatgaaaaatgctgcagttacataacgtattttcttcacagGATTCTTGACAATCTCCCACTAGTTGTTCCTATTGCAAGGCAGGATAGGGGTGCTACTGTTTACCAGGCTGGATATCATGTTGGTGTCAAGGGCCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA