1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaattaacatgcctatctactactacccccacagtttatgatcagatcatgttttaaagttgaccttctaaactgatctaattttggcattggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGTGCTGCTGCTGCCCCCAAGGAGGAAGAGAAGGCTCCAGAGCCTGCCGAGG
species | Zea mays |
transcript | GRMZM2G179976_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACGGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGAGGACTCTAGTEST: gi|32942953|gb|CF047772.1|CF047772
genomic: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGT
EST: ACCCACACGCCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGTEST: gi|166618054|gb|EG302127.1|EG302127
genomic: ACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGT
EST: CTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCEST: gi|74239990|gb|DT647904.1|DT647904
genomic: CTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTC
EST: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCCTGCTCCTGTAGCTGCTGCGGACTCTAGEST: gi|166411499|gb|EG308307.1|EG308307
genomic: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTG-CTGCTCCTGTAGCTGCTGCGGACTCTAG
EST: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCEST: gi|166693058|gb|EG202032.1|EG202032
genomic: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGC
EST: GACTGACTACTCGTACCCACACGACCGACAAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCTGCTCCEST: gi|89251150|gb|DY622936.1|DY622936
genomic: GACTGACTACTCGTACCCACACG-CCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCC
EST: AGACTGACTACTCGTACCCACACGCCGACNAGATCAAGGAGTACCTCAAG GACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGT
genomic: AGACTGACTACTCGTACCCACACGCCGACAAGATCAAGGAGTACCTCAAGgtagtgtgtg ... tggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGT
atcatgttttaaagttgaccttctaaactgatctaattttggcattggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGTGCTGCTGCTGCCCCCAAGGAGGAAGAGAAGGCTCCAGAGCCTGCCGAGG
ttttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattaacatgcctatctactactacccccacagtttatgatcagatcatgttttaaagttgaccttctaaactgatctaattttggcattggtttgcagGACCCGAGCAAGTTTGCTGTTGCTGCTCCTGTAGCTGCTGCGGACTCTAGTGCTGCTGCTGCCCCCAAGGAGGAAGAGAAGGCTCCAGAGCCTGCCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - acatgcc
- - - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - - - -catgttt