1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtgtgctactttgtaaaaaaacctgcatatacaagccgatctatagctagcctgagattgcatcgaccaatatatatgcatgcatatcaataacctcccataatgttttcgctaaatataatagctggtgtggttagttgatcaagctctacctagtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAGTCGGCGATCCGCCGCGGATCATGGAGTGCGGCGAGGACTCCGTGGAGA
species | Zea mays |
transcript | GRMZM2G179885_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148928954|gb|EC874063.2|EC874063
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: AGGCAAGGCCACGTCTCTCAGG CTCGACGAATGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148994538|gb|EE034127.2|EE034127
genomic: AGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148991087|gb|EE032535.2|EE032535
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149076917|gb|EE165573.2|EE165573
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149099135|gb|EE185158.2|EE185158
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTAGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148969854|gb|EE020750.2|EE020750
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: CCCGGCCGCCGCCGCCTGGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGAGGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|71756878|gb|DR954815.1|DR954815
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|71760843|gb|DR958780.1|DR958780
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: CCGGCCGCCGCCGCC-TGACAACGCCAGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149076918|gb|EE165574.2|EE165574
genomic: CCGGCCGCCGCCGCCTTG-CAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|71449659|gb|DR830709.1|DR830709
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148958368|gb|EC904597.2|EC904597
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149077513|gb|EE166211.2|EE166211
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTGGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149086510|gb|EE176054.2|EE176054
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149075036|gb|EE163511.2|EE163511
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|71441634|gb|DR822684.1|DR822684
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: CCGGCCGCCGCCGCCTTGCAACGCCGGAGGGCA-GGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148991089|gb|EE032537.2|EE032537
genomic: CCGGCCGCCGCCGCCTTGCAACGCCGGAGG-CAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|149099136|gb|EE185159.2|EE185159
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148991088|gb|EE032536.2|EE032536
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|78116101|gb|DV534489.1|DV534489
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: CGGCCGCCGCCGCCCTGCAACGCCGGGA-GCAAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148941728|gb|EC886680.2|EC886680
genomic: CGGCCGCCGCCGCCTTGCAACGCC-GGAGGC-AAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148931258|gb|EC874064.2|EC874064
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|78089362|gb|DV517736.1|DV517736
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|71435611|gb|DR816661.1|DR816661
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|78074655|gb|DV503089.1|DV503089
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148969855|gb|EE020751.2|EE020751
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148943109|gb|EC888166.2|EC888166
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: CTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|148958367|gb|EC904596.2|EC904596
genomic: CTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGG CTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAEST: gi|91877992|gb|EB407949.1|EB407949
genomic: GCCGGCCGCCGCCGCCTTGCAACGCCGGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
EST: GGAGGCAAGGCCACGTCTCTCAGG CTGGACGACTGGGTGGTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
genomic: GGAGGCAAGGCCACGTCTCTCAGGgtatgtgtgc ... agtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGA
cgctaaatataatagctggtgtggttagttgatcaagctctacctagtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAGTCGGCGATCCGCCGCGGATCATGGAGTGCGGCGAGGACTCCGTGGAGA
aatataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtgctactttgtaaaaaaacctgcatatacaagccgatctatagctagcctgagattgcatcgaccaatatatatgcatgcatatcaataacctcccataatgttttcgctaaatataatagctggtgtggttagttgatcaagctctacctagtgtctcagCTCGACGACTGGGTGTTATGCCGCATCTACAAGAAGATCGACAAACTTGGAGTCGGCGATCCGCCGCGGATCATGGAGTGCGGCGAGGACTCCGTGGAGA
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