1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaccgatcattcattcattccccacttctgtccacaatgttgtagaatcatgtgctgacaccggctctcggaaacaattattattattattattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGAGATGCGTGTCGGGGCCATCGAGCGATCCGGCGAGCGGGTGCTGGTCAT
species | Zea mays |
transcript | GRMZM2G179810_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGEST: gi|211347733|gb|FL243544.1|FL243544
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGEST: gi|211345334|gb|FL243533.1|FL243533
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
EST: GGCTATTGGCGCCAAGTTCATACCTCTGCGGAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATEST: gi|101394573|gb|EB819221.1|EB819221
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGAT
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGEST: gi|30088017|gb|CB886222.1|CB886222
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGEST: gi|60351100|gb|DN218073.1|DN218073
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGEST: gi|211542408|gb|FL173494.1|FL173494
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
EST: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAASSCAAGGAAGCTCCCAG GTGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACTGATTGCCTGG
genomic: GGCTATTGGCGCTAAGTTCATACCTCTGCGCAAGCCAAGGAAGCTCCCAGgtgagagatt ... ttattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGG
gaatcatgtgctgacaccggctctcggaaacaattattattattattattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGAGATGCGTGTCGGGGCCATCGAGCGATCCGGCGAGCGGGTGCTGGTCAT
tgctgac putative branch site (score: 2)
aaacaattattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaccgatcattcattcattccccacttctgtccacaatgttgtagaatcatgtgctgacaccggctctcggaaacaattattattattattattggaagGTGAGGTGATCTCCGAGAAGTACGTTCTCGAGTACGGGACTGATTGCCTGGAGATGCGTGTCGGGGCCATCGAGCGATCCGGCGAGCGGGTGCTGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG