1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgaaactactccactgcagcttcaaaatcaattgttctccctagtccttctctttactgctgtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTG
species | Zea mays |
transcript | GRMZM2G179793_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGT----C- G--G-ACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTGEST: gi|211037602|gb|FL306240.1|FL306240
genomic: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCTgtaagtgaaa ... gtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTG
EST: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCT GTCGGACAGCTGGTTTCATACTTCAAGATACCACTCEST: gi|18661101|gb|BM501210.1|BM501210
genomic: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCTgtaagtgaaa ... gtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTC
EST: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCT GTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTGEST: gi|211115067|gb|FL244800.1|FL244800
genomic: CTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCTgtaagtgaaa ... gtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTG
EST: GTAATGCTTGCCCAAGC-ACAGACTTTTATGAANTGCCAGTGGTGAGTCT GTCGGGACAGCTGGTTT
genomic: GTAATGCTTGCC-AAGCCACAGACTTTTATGAA-TGCAAGTGGTGAGTCTgtaagtgaaa ... gtttatgtagGTCGG-ACAGCTGGTTT
cagcttcaaaatcaattgttctccctagtccttctctttactgctgtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTG
tccttctctttactgc CT-rich tract
aaaatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaactactccactgcagcttcaaaatcaattgttctccctagtccttctctttactgctgtttatgtagGTCGGACAGCTGGTTTCATACTTCAAGATACCACTCAATCAATTAGTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG