1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagagctggccagcaagtgtataattttttattaagtactcaaaataaaagatagtcatgttaagtgcttactttggatgctttcctgcagTACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACA
species | Zea mays |
transcript | GRMZM2G179696_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACAATGGTGGACCTACTCAGACACAGAAGACGAGGATGATGATGACACG TACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACAEST: gi|26559817|gb|CA832052.1|CA832052
genomic: AACAATGGTGGACCTACTCAGACACAGAAGACGAGGATGATGATGACACGgtgagagctg ... tttcctgcagTACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACA
EST: AACAATGGTGGACCTACTCAGACACAGAAGACGAGGATGATGATGACACG TACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACAGCA
genomic: AACAATGGTGGACCTACTCAGACACAGAAGACGAGGATGATGATGACACGgtgagagctg ... tttcctgcagTACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACAGCA
tactcaaaataaaagatagtcatgttaagtgcttactttggatgctttcctgcagTACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACA
tgcttac putative branch site (score: 15)
tgctttcct putative PPT
aaaataaaagatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagctggccagcaagtgtataattttttattaagtactcaaaataaaagatagtcatgttaagtgcttactttggatgctttcctgcagTACGATGTGGAGTTTGAAAGAATGCCACAGATTAAACCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA