1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcactacttaaaaacgtaacatcaattttcatacaagttatctttacttttttttgcaaaattaaacaggtatactactaataatttttttccacaatagTCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGCTCAGTTGCTGGCATATATCCTATGAGCTATGAACCTGTGTATAGCGGGA
species | Zea mays |
transcript | GRMZM2G179045_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGTAAATGTGAATCTTGTTGCTGTTATCGATGGGACGCGCATTGCA TCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGCEST: gi|20506809|gb|BQ279351.1|BQ279351
genomic: GTGCTGTAAATGTGAATCTTGTTGCTGTTATCGATGGGACGCGCATTGCAgtaagcctca ... tccacaatagTCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGC
EST: GTGCTGTAAATGTGAATCTTGTTGCTGNTATCGATGGGACGCGCATTGCA TCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGC
genomic: GTGCTGTAAATGTGAATCTTGTTGCTGTTATCGATGGGACGCGCATTGCAgtaagcctca ... tccacaatagTCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGC
acttttttttgcaaaattaaacaggtatactactaataatttttttccacaatagTCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGCTCAGTTGCTGGCATATATCCTATGAGCTATGAACCTGTGTATAGCGGGA
tactaat putative branch site (score: 10)
tttttttccac putative PPT
aaaattaaacaggtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcactacttaaaaacgtaacatcaattttcatacaagttatctttacttttttttgcaaaattaaacaggtatactactaataatttttttccacaatagTCTCAAGTAATGCGATCCCAGAAGAAGCCCGGCGTCATAATAAATATTAGCTCAGTTGCTGGCATATATCCTATGAGCTATGAACCTGTGTATAGCGGGA
gcactac
- - - - - - - - -aacatca
- - - - - - - - - - - - - - -catacaa