Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctctgtcccaatggttgctgattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT

Basic information

species Zea mays
transcript GRMZM2G178807_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178807_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------gtatggctctgtcccaatggttgctgatt--cagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACC--CGCAAGATCTTGCAGCT--CCTGCGT-----TTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT--------------------------------------
                                  |||    ||  |  | || ||  |||||   | ||| |||          | |    ||  |  ||  ||||  |  ||   |   |   |    |||||    ||    ||  | || |  | | |||     ||   |||||||||||||||||| ||||| ||||| |||||||||||  |                                       
gtaggtttcacagtttgttattttcatccagctatattagcctaacata-tgattattgattaatatttgttatatgttcaaactaatatgtgatagttgc-ctgttcatcatttttaaaagagagtagaagactattgcgttgtcaagaagtttactttcgtatacatttgtgcagATCTTCAATGGTGTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGG

upper sequence: GRMZM2G178807_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s2761g00010.t01 (Vitis vinifera), 3'ss of exon 1
-------------gtatggctctgtcccaatggttgct--gattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgt--agTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT
              ||| | | | | ||| || |  ||    ||   |    ||  ||  ||  | | |   ||| | | ||     |  ||||||||||| |||||||| |||||  | ||||| ||||||||| |||||||||| |||                                          
gtatgcacttggactatagttat-ttccattgatacctttactttcatattaatattctggttctcattcccgtccactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTTGAGACAG------------------------------------------

upper sequence: GRMZM2G178807_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtatggctctgtcccaatggttgct--gattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgt--agTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT
              ||| | | | | ||| || |  ||    ||   |    ||  ||  ||  | | |  |||  | | ||     |  ||||||||||| |||||||| |||||  | ||||| ||||||||| |||||||||| |||                                          
gtatgcacttggactatagttat-ttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTTGAGACAG------------------------------------------

upper sequence: GRMZM2G178807_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 2
--gtatggctctgtcccaatggttgctgattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT
  |  ||| | | ||    | | |  | | || ||    | |    ||| ||  || ||||      |    |  |||||||| | |||||| ||||||||||| |||||||||||||| || ||  || | |||                                          
gtgagtggtttt-tctttctcgattttaagtctgtacaaacg---gagtattatcttttgt------tttcatccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG------------------------------------------

upper sequence: GRMZM2G178807_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 2
gtatggctctgtcccaatggttgctgattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT
   ||| |   |     |  | | |  || |||   ||    |      | | | ||||      |    |  |||||||| | |||||| ||||||||||| |||||||||||||| || ||  || | |||                                          
--gtgggtgaattttccttctcgatt-ttaagtccgtacaaacggagtataaattttgt------tttcatccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211404173|gb|FL329199.1|FL329199
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211404340|gb|FL336248.1|FL336248
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211294075|gb|FL367899.1|FL367899
EST:     TTCTATGTGAGCTCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211058447|gb|FL334673.1|FL334673
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211270703|gb|FL364931.1|FL364931
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211309962|gb|FL324309.1|FL324309
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211465211|gb|FL336838.1|FL336838
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211049337|gb|FL322306.1|FL322306
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211149765|gb|FL359577.1|FL359577
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211320069|gb|FL327290.1|FL327290
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211331074|gb|FL338521.1|FL338521
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTNT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211116311|gb|FL310194.1|FL310194
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211036159|gb|FL345800.1|FL345800
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|21809687|gb|BQ668005.1|BQ668005
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211375660|gb|FL343002.1|FL343002
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|50328295|gb|CO523421.1|CO523421
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211438494|gb|FL357614.1|FL357614
EST:     TCTATGTGAGCCCAGAGGCCAAGCCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TCTATGTGAGCCCAGAGGCCAAGC-TTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211231342|gb|FL356545.1|FL356545
EST:     TTCTATGTGAGCCCAGACGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211183807|gb|FL343285.1|FL343285
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211098730|gb|FL335597.1|FL335597
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCCGCAAGATCTTGCAG
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCC-GCAAGATCTTGCAG
EST: gi|211388669|gb|FL330062.1|FL330062
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCA
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCA
EST: gi|211052187|gb|FL320177.1|FL320177
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|71307122|gb|DR789735.1|DR789735
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211193013|gb|FL326452.1|FL326452
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211103246|gb|FL316732.1|FL316732
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211519509|gb|FL329285.1|FL329285
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|91872514|gb|EB402471.1|EB402471
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTTCCTGCGTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCT-CCTGCGTT
EST: gi|211514465|gb|FL316121.1|FL316121
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211101316|gb|FL340531.1|FL340531
EST:     TTCTATGTGAGCCCAGAAGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCA
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCA
EST: gi|211433379|gb|FL361081.1|FL361081
EST:     TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
genomic: TTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTT
EST: gi|211302645|gb|FL367969.1|FL367969
EST:     TCTATGTGAGCCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCAC
genomic: TCTATGTGAGCCC-AGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 377

GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 260

GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 286

GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGTTGAAGGGTGGGTTCTATGTGAGCCCAGAGGCCAAGCTTCTGTTTGTGGTCCGCATCCGTGGgtatggctct ... tgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT
                          tgttgac  putative branch site (score: 145)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggctctgtcccaatggttgctgattcagttgctatgctcaagtgttgactgttgtcaaatgtgctgtgtagTATCAATGCCATGCACCCCAAGACCCGCAAGATCTTGCAGCTCCTGCGTTTGAGGCAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAGGCAACTATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT