1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgttttccctaagtccttttaaaattagcagtccagtgcaatttcagttcgctttctaaacattgtattcacagatgcgtgctgcagTGAGGCATGCGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAG
species | Zea mays |
transcript | GRMZM2G178546_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAG AEST: gi|149101959|gb|EE287477.2|EE287477
genomic: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgttttc ... cgtgctgcag-
EST: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAG AEST: gi|93281239|gb|EB673503.1|EB673503
genomic: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgttttc ... cgtgctgcag-
EST: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAG TGAGGCATGCGGCAT
genomic: CACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgttttc ... cgtgctgcagTGAGGCATGCGGCAT
ccagtgcaatttcagttcgctttctaaacattgtattcacagatgcgtgctgcagTGAGGCATGCGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAG
ttctaaa putative branch site (score: 2)
tttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttccctaagtccttttaaaattagcagtccagtgcaatttcagttcgctttctaaacattgtattcacagatgcgtgctgcagTGAGGCATGCGGCATCACTTTTCCCAACTGCAATCATTAGCGGAAGATCTCGTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA