1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacctgaatacgtacactgcaagaggccaagagccaacagaccccctttctttgctactactaataaacctccgggaccttcgtagATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAACTTCGTCCACCTCGACATGCCCAAGACCTGGCAGGCAATGGAGAGGCTGT
species | Zea mays |
transcript | GRMZM2G178533_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGACATCACCCTGAATGATCTGCAGCTAGATTATCTTGACCTGTACCTG ATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAACEST: gi|71448406|gb|DR829456.1|DR829456
genomic: TCGACATCACCCTGAATGATCTGCAGCTAGATTATCTTGACCTGTACCTGgtaacctgaa ... accttcgtagATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAAC
EST: TCGACATCACCCTGAATGATCTGCAGCTAGATTATCTTGACCTGTACCTG ATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAAC
genomic: TCGACATCACCCTGAATGATCTGCAGCTAGATTATCTTGACCTGTACCTGgtaacctgaa ... accttcgtagATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAAC
agccaacagaccccctttctttgctactactaataaacctccgggaccttcgtagATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAACTTCGTCCACCTCGACATGCCCAAGACCTGGCAGGCAATGGAGAGGCTGT
tactaat putative branch site (score: 1)
ccttcgt putative PPT
tactaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctgaatacgtacactgcaagaggccaagagccaacagaccccctttctttgctactactaataaacctccgggaccttcgtagATACACTGGCCCTTCCAGATAAAGAGAGGCAGCGAGCTCAGTCCAGAGAACTTCGTCCACCTCGACATGCCCAAGACCTGGCAGGCAATGGAGAGGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG