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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA

Basic information

species Zea mays
transcript GRMZM2G178415_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g58040.2 (Oryza sativa), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttg-acaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
   | |    || ||    || |       | |  || |   | |  | |  ||  |     |    |  | ||   |    | || ||   |  |  ||||||||||||||||| || ||||| ||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| ||||||||||| ||||| |
-ctcttagtatttaagactatctgaaaacacttccaaaataaagtatattgtgtacggttgcagcaagtacttgcaatgactagtctttcatattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGGCCGTGGCTAATATTCCATATGGAGGAGCTAAAGGTGGAATAGGATGCA

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G04560.2 (Glycine max), 3'ss of exon 3
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgaca----acccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
     ||| ||   ||  | |           ||||    |   |    |  ||   | | |     ||| || |   |   |||| ||| |      |   ||||||| ||||||||||| ||||| || |||||| | ||||| ||||||||||| ||||| || ||||||||||| || |||||||| || || || ||| 
--aacttttctgtgaaccagtccctggaactgtttatatttgtatatggtgtgtactttagattctcggttctcac--tctgaatcatttaatggaataaatagGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgaca----acccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
     |||| ||  || || |           ||||    |   |    |  ||   |   |      || || |   |   |||| ||| |      |   ||||||| ||||||||||| ||||| || |||||| | ||||| ||||||||||| ||||| || ||||||||||| || |||||||| || || || ||| 
--aactttcgtttgaactagtccctggaactgtttatatttgtatatggtgtgtacttttgattctcagttctcac--tatgaatcatttaatggaataaatagGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G07940.1 (Glycine max), 3'ss of exon 3
atccatttccttcaaattaattttcctcttcatttaagactcattgaa--atccgttggtgaa----aaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
               ||| || |||    | |   || ||||| |||   ||| |||  |       || |    ||      |   |  || || |       ||||||| || |||||||| ||||| ||||||||| | ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| || || || ||| 
------------gttatttatattctgacttacaaaaaactcagtgatttatctgtttataggttttaagttctatcactcaatcatatgtctttggcttgagtagGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTAGCGAATATACCATATGGTGGAGCCAAAGGAGGGATAGGGTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G26940.1 (Glycine max), 3'ss of exon 2
---atccatttccttcaaattaat-tttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
   ||  | ||    |  || | | |||  | | | ||||    |  ||    |     |||  ||  ||     |  |  | || | |   ||||      ||||||| || |||||||| ||||| ||||||||| | ||||| ||||| ||||| ||||| || ||||||||||| || |||||||| ||||| || ||| 
caaattgaattttagctcataactgtttagtatgcttttagtgatttttctgtttataaggtttaagttccctcacacaattatgtattggcttgag----tagGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGAATAGGGTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
 |   |||   ||   ||  ||||    |  |   || ||  ||| ||     ||||    ||   |   || ||| |  | ||||    ||||     |||||| || |||||||| || || ||||| ||| | ||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||| || ||| 
gtttgttttactctgttt--ttttttcatcaaaccaaaacaaattcaa---tattggcatgaag--taaaccagatttcggtaatc----gaca-----gGTTGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAAGATACCTTATGGAGGAGCCAAAGGAGGAATCGGTTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcat-tgaaatccgttggtgaaaaatct-ggtcctgatgtttga----aatcctttgacaacc-----cagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
 |   |  ||||   | |  ||  ||| || |   || |||||  || ||       ||  | ||| | |||  || | | |||    || |  ||  |         ||||||||||| |||||||| || || ||||| ||  | ||||| |||||||||||||| ||||| || || || |||||||| ||||| || ||||| ||| 
gtttttgaccttttgact--ttgaccttttgaaccaaaactcaaatgtaacaaaccagtatacaatttcggttttggtatatgatgcaaaccggttatcgttttcttgcagGTTGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTG

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 4
-------atccatttc-cttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
        | ||| |  ||| ||||||| | | |||| ||  |  |   ||  ||  |  | |  || |   |   ||   |||| | | |   ||||   |     |||||| || ||||| || ||||| ||||||||| | ||||| ||||| ||||||||||| || || ||||| || || |||||||| || || |||||||
ccagggttttcatgtagctttaaattaaatctactctccagcttgggaaca--gatttgtgctattgcagt-ttcagtttggatgatcgcatagcttttgta-----gGTTGACCCAGATGAGGTAAATGCTTTGGCACAACTAATGACGTGGAAGACAGCAGTAGCAAATATTCCATACGGTGGGGCCAAAGGAGGGATAGGATGTA

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S62_236V6.3 (Physcomitrella patens), 3'ss of exon 3
----atccatttccttcaaattaattt--------tcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacc-cagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
     | ||  |  ||  |||||   |        | |  |||||  |||  |        | | || |   |   |  |||| | |      |     || |||     ||||||||     |||| || ||||| |||||||| |||||||| |||||| | ||||| || ||||||||||| || ||||| || || || ||||||||||
gtatcttcaagtgtttgcaattagcgtaatgcacattcctttcatcgaaggtttggctggcttcctttg---agttttcggtcttca-acaaaatgcgtttcgacttttgcagGTTGAGTTGAATGAGGTGAATGCTTTGGCACAGTTGATGACATGGAAATCTGCAGTGGCGAACATACCATACGGGGGAGCGAAGGGAGGCATTGGATGTA

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaaccc--agGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
                                            | |||          | ||| ||     | ||    |   | | ||  |  ||   ||| |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||
-------------------------------------------gtaaaagaaacaaaaaagaaaactctatataat-cgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA

upper sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
                                        | |  ||||          ||   | |  ||  | | ||    |||||     |     || |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||
---------------------------------------gtaaaagaaacaaaaaacaaaactctataatcgcgcttttccttatcctcctgta-----gGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148940231|gb|EC885000.2|EC885000
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|71426412|gb|DR807462.1|DR807462
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|148966781|gb|EE017869.2|EE017869
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|78089717|gb|DV518091.1|DV518091
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|60354014|gb|DN220987.1|DN220987
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|87152935|gb|DY397724.1|DY397724
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|149080931|gb|EE170020.2|EE170020
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|91867926|gb|EB399854.1|EB399854
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|78092010|gb|DV520384.1|DV520384
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|22935999|gb|BU572274.1|BU572274
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|149101283|gb|EE187396.2|EE187396
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|148981458|gb|EE027657.2|EE027657
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|71323470|gb|DR798386.1|DR798386
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|149096793|gb|EE182577.2|EE182577
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|20299950|gb|BQ162893.1|BQ162893
EST:     GGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: GGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|78077526|gb|DV505960.1|DV505960
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|22491555|gb|BU051478.1|BU051478
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|211162030|gb|FL334317.1|FL334317
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|86466439|gb|DY232809.1|DY232809
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|93012302|gb|EB637822.1|EB637822
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|87156586|gb|DY401375.1|DY401375
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|71328974|gb|DR801177.1|DR801177
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|149110227|gb|EE190296.2|EE190296
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|19351039|gb|BM895571.1|BM895571
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|50330056|gb|CO525182.1|CO525182
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|148994453|gb|EE034100.2|EE034100
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|26559718|gb|CA831953.1|CA831953
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
EST: gi|17921570|gb|BM259221.1|BM259221
EST:     ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG                         GTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA
genomic: ATGATAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtaagcaaat ... gacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA
                                       tcctttg  CT-rich tract
            tgaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg