1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatgaggagaaatgtgtgctatatgatggcttgttctggattactggcagacattgggagcttttttcttatcatttccccatgtttacctttttacagAATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCTGATCATTTCTGGAATAAGAGGTTTCGAGATTCCTCCTATTCCAAGGGAG
species | Zea mays |
transcript | GRMZM2G178319_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCTTCGGGATAGACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGG AATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCTEST: gi|9733198|gb|BE511950.1|BE511950
genomic: CGGCTTCGGGATAGACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGGgtgagtattc ... ctttttacagAATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCT
EST: GGCTTCGGGATATTACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGG AATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCT
genomic: GGCTTCGGGATA-GACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGGgtgagtattc ... ctttttacagAATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCT
tggcagacattgggagcttttttcttatcatttccccatgtttacctttttacagAATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCTGATCATTTCTGGAATAAGAGGTTTCGAGATTCCTCCTATTCCAAGGGAG
cttttttcttatcatt CT-rich tract
ttttttcttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgaggagaaatgtgtgctatatgatggcttgttctggattactggcagacattgggagcttttttcttatcatttccccatgtttacctttttacagAATGGCCAAGATGTGGAGTTCTATGTACCGCCATCATAGAAGTCAGTTCCTGATCATTTCTGGAATAAGAGGTTTCGAGATTCCTCCTATTCCAAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - -tgtgcta
- - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - tactggc